convertBed2Exons-methods: convert a data frame read-in from a bed file to a GRanges...

Description Usage Arguments Value Note Examples

Description

convert a data frame read-in from a bed file to a GRanges object for exons

Usage

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convertBed2Exons(bed.df)

## S4 method for signature 'data.frame'
convertBed2Exons(bed.df)

Arguments

bed.df

a data.frame where column order and content resembles a bed file with 12 columns

Value

GRanges object

Note

one bed track per file is only accepted, the bed files with multiple tracks will cause en error

Examples

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file = system.file('extdata/chr21.refseq.hg19.bed', package='genomation')
bed12 = read.table(file)
exons = convertBed2Exons(bed12)
head(exons)

BIMSBbioinfo/genomation documentation built on Feb. 4, 2018, 12:11 p.m.