convertBed2Introns-methods: convert a data frame read-in from a bed file to a GRanges...
In BIMSBbioinfo/genomation: Summary, annotation and visualization of genomic data
Description
Usage
Arguments
Value
Note
Examples
Description
convert a data frame read-in from a bed file to a GRanges object for introns
Usage
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convertBed2Introns(bed.df)
## S4 method for signature 'data.frame'
convertBed2Introns(bed.df)
Arguments
bed.df
a data.frame where column order and content
resembles a bed file with 12 columns
Value
GRanges object
Note
one bed track per file is only accepted, the bed files with
multiple tracks will cause en error
Examples
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file = system.file('extdata/chr21.refseq.hg19.bed', package='genomation')
bed12 = read.table(file)
introns = convertBed2Introns(bed12)
head(introns)
BIMSBbioinfo/genomation documentation built on March 13, 2020, 5:28 a.m.
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Description Usage Arguments Value Note Examples
Description
convert a data frame read-in from a bed file to a GRanges object for introns
Usage
1 2 3 4 | convertBed2Introns(bed.df)
## S4 method for signature 'data.frame'
convertBed2Introns(bed.df)
|
Arguments
bed.df |
a data.frame where column order and content resembles a bed file with 12 columns |
Value
GRanges object
Note
one bed track per file is only accepted, the bed files with multiple tracks will cause en error
Examples
1 2 3 4 | file = system.file('extdata/chr21.refseq.hg19.bed', package='genomation')
bed12 = read.table(file)
introns = convertBed2Introns(bed12)
head(introns)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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