Files in BUStools/BUSpaRse
kallisto | bustools R utilities
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/annots_from_fa.R
R/biotypes.R
R/get_tx.R
R/knee_plot.R
R/sparse_matrix.R
R/tr2g.R
R/utils.R
R/velocity.R
R/velocity_methods.R
README.md
data-raw/generate_matrix_test.R
data-raw/generate_tr2g_test.R
data-raw/generate_velocity_test.R
data/cellranger_biotypes.rda
data/ensembl_gene_biotypes.rda
data/ensembl_gff_mcols.rda
data/ensembl_gtf_mcols.rda
data/ensembl_tx_biotypes.rda
data/refseq_gff_mcols.rda
inst/testdata/fa_tr2g_dm.csv
inst/testdata/fa_tr2g_expected.csv
inst/testdata/fa_tr2g_no_version.csv
inst/testdata/fasta_dm_test.fasta
inst/testdata/fasta_test.fasta
inst/testdata/genes.barcodes.txt
inst/testdata/genes.genes.txt
inst/testdata/genes.mtx
inst/testdata/gff3_test.gff3
inst/testdata/gtf_test.gtf
inst/testdata/junction_capture.txt
inst/testdata/junction_coll.fa
inst/testdata/junction_tr2g.tsv
inst/testdata/junction_tr2g_coll.tsv
inst/testdata/junctions.fa
inst/testdata/matrix.ec
inst/testdata/output.sorted.txt
inst/testdata/toy_example.RData
inst/testdata/tr2g_bustools.tsv
inst/testdata/tr2g_expected.csv
inst/testdata/tr2g_expected_version.csv
inst/testdata/transcripts.txt
inst/testdata/velocity_annot.gtf
inst/testdata/velocity_cdna_tx.txt
inst/testdata/velocity_genome.fa
inst/testdata/velocity_introns.fa
inst/testdata/velocity_introns_capture.txt
inst/testdata/velocity_introns_coll.fa
inst/testdata/velocity_introns_coll_capture.txt
inst/testdata/velocity_tr2g.tsv
inst/testdata/velocity_tr2g_coll.tsv
inst/testdata/velocity_tx.fa
man/EC2gene.Rd
man/annot_circular.Rd
man/annots_from_fa_df.Rd
man/cellranger_biotypes.Rd
man/check_char1.Rd
man/check_genome.Rd
man/check_gff.Rd
man/check_tag_present.Rd
man/check_tx.Rd
man/dl_transcriptome.Rd
man/dot-get_velocity_files.Rd
man/ensembl_gene_biotypes.Rd
man/ensembl_gff_mcols.Rd
man/ensembl_gtf_mcols.Rd
man/ensembl_tx_biotypes.Rd
man/get_intron_flanks.Rd
man/get_velocity_files.Rd
man/knee_plot.Rd
man/make_sparse_matrix.Rd
man/match_style.Rd
man/read_count_output.Rd
man/read_velocity_output.Rd
man/refseq_gff_mcols.Rd
man/save_tr2g_bustools.Rd
man/sort_tr2g.Rd
man/species2dataset.Rd
man/standardize_tags.Rd
man/sub_annot.Rd
man/subset_annot.Rd
man/tr2g_EnsDb.Rd
man/tr2g_GRanges.Rd
man/tr2g_TxDb.Rd
man/tr2g_ensembl.Rd
man/tr2g_fasta.Rd
man/tr2g_gff3.Rd
man/tr2g_gtf.Rd
man/tr2g_junction.Rd
man/transcript2gene.Rd
man/validate_velocity_input.Rd
man/write_velocity_output.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/fill_cell_gene.cpp
tests/testthat.R
tests/testthat/test_sparse_matrix.R
tests/testthat/test_tr2g.R
tests/testthat/test_velocity.R
vignettes/.gitignore
vignettes/sparse-matrix.Rmd
vignettes/tr2g.Rmd
