get_intron_flanks: Get flanked intronic ranges
In BUStools/BUSpaRse: kallisto | bustools R utilities
get_intron_flanks R Documentation
Get flanked intronic ranges
Description
Get flanked intronic ranges
Usage
get_intron_flanks(grl, L, get_junctions)
Arguments
grl
A CompressedGRangesList for exonic ranges, each element for one
transcript.
L
Read length.
get_junctions
Logical, whether to also return exon-exon junctions.
Value
If get_junctions is FALSE, then a GRanges object
with ranges for flanked intronic regions. If get_junctions is TRUE, then
in addition to the flanked intronic ranges, a CompressedGRangesList with
exon-exon junction ranges and ranges for transcripts without introns.
BUStools/BUSpaRse documentation built on March 3, 2024, 9:11 a.m.
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| get_intron_flanks | R Documentation |
Get flanked intronic ranges
Description
Get flanked intronic ranges
Usage
get_intron_flanks(grl, L, get_junctions)
Arguments
grl |
A |
L |
Read length. |
get_junctions |
Logical, whether to also return exon-exon junctions. |
Value
If get_junctions is FALSE, then a GRanges object
with ranges for flanked intronic regions. If get_junctions is TRUE, then
in addition to the flanked intronic ranges, a CompressedGRangesList with
exon-exon junction ranges and ranges for transcripts without introns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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