check_tag_present: Check that a tag is present in attribute field of GTF/GFF
In BUStools/BUSpaRse: kallisto | bustools R utilities
check_tag_present R Documentation
Check that a tag is present in attribute field of GTF/GFF
Description
The attribute field of GTF/GFF files are very complicated and is very
inconsistent between sources. This function is to make sure that transcript
and gene IDs can be extracted properly.
Usage
check_tag_present(tags_use, tags, error = TRUE)
Arguments
tags_use
The tags to be checked.
tags
The tags present in attribute field.
error
Whether to throw an error for absent tags. If FALSE, then
a warning will be given.
Value
Error or warning if tag is absent.
BUStools/BUSpaRse documentation built on Aug. 2, 2024, 5:07 a.m.
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| check_tag_present | R Documentation |
Check that a tag is present in attribute field of GTF/GFF
Description
The attribute field of GTF/GFF files are very complicated and is very inconsistent between sources. This function is to make sure that transcript and gene IDs can be extracted properly.
Usage
check_tag_present(tags_use, tags, error = TRUE)
Arguments
tags_use |
The tags to be checked. |
tags |
The tags present in attribute field. |
error |
Whether to throw an error for absent tags. If |
Value
Error or warning if tag is absent.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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