check_tx: Check if transcript ID in transcriptome and annotation match

In BUStools/BUSpaRse: kallisto | bustools R utilities

Check if transcript ID in transcriptome and annotation match

Description

This function throws an error if transcript IDs in transcriptome and annotation do not overlap. If they do overlap, this function will give a message about transcript IDs that do not agree in the transcriptome and the annotation

Usage

check_tx(tx_annot, tx)

Arguments

tx_annot	Character vector of transcript IDs from the annotation.
tx	Character vector of transcript IDs from the transcriptome.

Value

Character vector of the overlapping transcript IDs.

BUStools/BUSpaRse documentation built on Aug. 2, 2024, 5:07 a.m.