Man pages for BaderLab/POPPATHR
Population-based pathway analysis of SNP-SNP coevolution
| calcFST | Calculates SNP-level FST values given two populations |
| getBiogrid | Script to determine the fraction of within and... |
| plotEmap | Plots an EnrichmentMap in Cytoscape to visualize... |
| popPCA | Determines population stratification between different... |
| recodeFAM | Recodes PLINK fam file with population-specific codes |
| setupGSEArun | Sets up and runs GSEA using population-based FST values |
| SNP2gene | Maps SNPs to their nearest genes |
| SNPassocBPM | Calculates SNP-SNP association statistics and perform... |
| SNPassocWPM | Calculates SNP-SNP association statistics and perform... |
| writeEmapFile | Writes enrichment file for use in Cytoscape EnrichmentMap |
| writePathFiles | Generates SNP lists per selection-enriched and unenriched... |
