calcFST: Calculates SNP-level FST values given two populations
In BaderLab/POPPATHR: Population-based pathway analysis of SNP-SNP coevolution
Description
Usage
Arguments
Value
View source: R/~old/R/calcFST.R
View source: R/calcFST.R
Description
Calculates SNP-level FST values given two populations
Usage
1
calcFST(genotype_file, fam_file, output_folder, output_file)
Arguments
genotype_file
(char) path to PLINK-formatted SNP genotype data.
fam_file
(char) path to PLINK population-coded fam file.
output_folder
(char) path to output directory.
output_file
(char) path to final GSEA-formatted input file.
Value
none
BaderLab/POPPATHR documentation built on Dec. 17, 2021, 9:53 a.m.
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Description Usage Arguments Value
View source: R/~old/R/calcFST.R View source: R/calcFST.R
Description
Calculates SNP-level FST values given two populations
Usage
1 | calcFST(genotype_file, fam_file, output_folder, output_file)
|
Arguments
genotype_file |
(char) path to PLINK-formatted SNP genotype data. |
fam_file |
(char) path to PLINK population-coded fam file. |
output_folder |
(char) path to output directory. |
output_file |
(char) path to final GSEA-formatted input file. |
Value
none
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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