SNPassocBPM: Calculates SNP-SNP association statistics and perform...
In BaderLab/POPPATHR: Population-based pathway analysis of SNP-SNP coevolution

Calculates SNP-SNP association statistics and perform exploratory analyses within pathways

SNPassocBPM(
  pop_one,
  pop_two,
  snp2gene_file,
  ASSOC_FDR = 0.05,
  enrich_folder,
  unenrich_folder,
  output_folder
)

`pop_one`	(char) character code for the first population (e.g., CEU).
`pop_two`	(char) character code for the second population (e.g., YRI).
`snp2gene_file`	(char) path to file with snp-to-gene mappings (output of SNP2gene.R).
`ASSOC_FDR`	(interger) FDR value to define significant pathway coevolution (default=0.05).
`enrich_folder`	(char) path to selection-enriched pathway SNP lists.
`unenrich_folder`	(char) path to unenriched pathway SNP lists.
`output_folder`	(char) path to output directory.