writeEmapFile: Writes enrichment file for use in Cytoscape EnrichmentMap
In BaderLab/POPPATHR: Population-based pathway analysis of SNP-SNP coevolution
Description
Usage
Arguments
Value
View source: R/writeEmapFile.R
Description
Writes enrichment file for use in Cytoscape EnrichmentMap
Usage
1
writeEmapFile(results_file, ENRICH_NES = 3, out_file)
Arguments
results_file
(list) file paths to results.txt for each population comparison
(generated by setupGSEArun.R).
ENRICH_NES
(integer) NES cutoff to select validated selection-enriched
pathways (default=3).
out_file
(char) name of output file.
Value
none. Output file written into directory of first population comparison.
(e.g., CEU_YRI directory)
BaderLab/POPPATHR documentation built on Dec. 17, 2021, 9:53 a.m.
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Description Usage Arguments Value
View source: R/writeEmapFile.R
Description
Writes enrichment file for use in Cytoscape EnrichmentMap
Usage
1 | writeEmapFile(results_file, ENRICH_NES = 3, out_file)
|
Arguments
results_file |
(list) file paths to results.txt for each population comparison (generated by setupGSEArun.R). |
ENRICH_NES |
(integer) NES cutoff to select validated selection-enriched pathways (default=3). |
out_file |
(char) name of output file. |
Value
none. Output file written into directory of first population comparison. (e.g., CEU_YRI directory)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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