Description Usage Arguments Value
Calculates SNP-SNP association statistics and perform exploratory analyses within pathways
1 2 3 4 5 6 7 8 9 | SNPassocWPM(
pop_one,
pop_two,
snp2gene_file,
ASSOC_FDR = 0.05,
enrich_folder,
unenrich_folder,
output_folder
)
|
pop_one |
(char) character code for the first population (e.g., CEU). |
pop_two |
(char) character code for the second population (e.g., YRI). |
snp2gene_file |
(char) path to file with snp-to-gene mappings (output of SNP2gene.R). |
ASSOC_FDR |
(interger) FDR value to define significant pathway coevolution (default=0.05). |
enrich_folder |
(char) path to selection-enriched pathway SNP lists. |
unenrich_folder |
(char) path to unenriched pathway SNP lists. |
output_folder |
(char) path to output directory. |
none
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