API for BaderLab/POPPATHR
Population-based pathway analysis of SNP-SNP coevolution

Global functions
LDstats	Source code Source code Source code Source code Source code Source code Source code
SNP2gene	Man page Source code Source code
SNPassocBPM	Man page Source code
SNPassocWPM	Man page Source code
annotateSnps	Source code Source code
box.style	Source code
calc.p	Source code
calcFST	Man page Source code Source code
calcMAFdiff	Source code
calculateAssoc	Source code Source code
calculateAssoc_pops	Source code
calculateFst	Source code
calculateMAFdiff	Source code Source code
calculateR2	Source code
countDrugs	Source code
createPseudo	Source code
doCalc	Source code
formatBio	Source code
formatFunciSnpInput	Source code
getBiogrid	Man page Source code
getGeneProperties	Source code Source code Source code
getGenos	Source code
getGreatCircle	Source code
getPathStats	Source code Source code
getSNPlists	Source code
getSnpList	Source code Source code
give.n	Source code
is.between	Source code
lm_eqn	Source code Source code Source code
pathPosSel	Source code
plotEmap	Man page Source code
popPCA	Man page Source code Source code Source code Source code
powerTest	Source code Source code
readPathways	Source code
recodeFAM	Man page Source code Source code
removeTopGenes	Source code
scale_colour_Publication	Source code
scale_fill_Publication	Source code
setupGSEArun	Man page Source code Source code Source code
theme_Publication	Source code
uniqueTag	Source code
writeEmapFile	Man page Source code
writePathFiles	Man page Source code
writeTopGroups	Source code
yesPerc	Source code

BaderLab/POPPATHR documentation built on Dec. 17, 2021, 9:53 a.m.

Note that we can't provide technical support on individual packages. You should contact the package authors for that.