Man pages for BarlierC/FunPart
Functional splitting based on functionally relevant set of genes
| build_branch_module | CALLED BY build_levels_based_clique() to build cluster for... |
| build_levels_based_clique | RECURSIVE FUNCTION: Build the child level: split in two the... |
| build_object | Build the functional splitting object |
| compareClk | Identify if a clique is unique |
| compareExp | Identify if target is expressed in similar cells as regulator... |
| fillEnrichFunPartObj | Update FunPart object structure Add modules &... |
| filter_mtx | Clean the data matrix |
| filter_na_inf | Filter NA and Inf values |
| filter_norm_data | Clean (and normalize) the data |
| find_mutual_cliques | Identify the best antagonistic pair of cliques |
| getEnrichedBP | GO enrichment of a set of genes |
| getEnrichedBPManual | Get all the BPs enriched (used to fill in the new structure... |
| getMeanRatioExpModule | Get mean ratio cell expressing TFs of the module |
| getModuleFunctionalState | Process FunPart objects content into a table with all results |
| get_types | Get types |
| hierarchical_clust | Hierarchical clustering using Pheatmap package |
| init_obj | Initialise functional splitting object elements |
| run_functional_splitting | MAIN FUNCTION: functional splitting |
| runGOanalysis_listSetGenes | Run BP enrichment for a list of set of genes |
| set_names | Set names |
| seur_create | Create a Seurat object |
| test_new_clique_from_list | Test different cliques to be used if one get drop out all... |
