getEnrichedBP: GO enrichment of a set of genes
In BarlierC/FunPart: Functional splitting based on functionally relevant set of genes
Description
Usage
Arguments
Value
Author(s)
View source: R/getEnrichedBP.R
Description
GO enrichment of a set of genes
Usage
1
getEnrichedBP(dataset, setGenes, gda, adjMethod, cutoff)
Arguments
dataset
single-cell dataset (cells in columns / genes in rows)
setGenes
vector of genes (from one antagonistic module)
gda
data.frame of GO slim annotations
adjMethod
multiple test correction to perform
cutoff
p-adjusted p-value cutoff used for the enrichment
Value
data.frame of enriched BP
Author(s)
Celine Barlier
BarlierC/FunPart documentation built on Dec. 17, 2021, 10:45 a.m.
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Description Usage Arguments Value Author(s)
View source: R/getEnrichedBP.R
Description
GO enrichment of a set of genes
Usage
1 | getEnrichedBP(dataset, setGenes, gda, adjMethod, cutoff)
|
Arguments
dataset |
single-cell dataset (cells in columns / genes in rows) |
setGenes |
vector of genes (from one antagonistic module) |
gda |
data.frame of GO slim annotations |
adjMethod |
multiple test correction to perform |
cutoff |
p-adjusted p-value cutoff used for the enrichment |
Value
data.frame of enriched BP
Author(s)
Celine Barlier
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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