build_levels_based_clique: RECURSIVE FUNCTION: Build the child level: split in two the...

In BarlierC/FunPart: Functional splitting based on functionally relevant set of genes

Description

RECURSIVE FUNCTION: Build the child level: split in two the parent

Usage

build_levels_based_clique(
  dfClust,
  scm,
  scm_nm,
  firstLevel,
  clStop,
  lev = 2,
  tfs,
  setGenesHC,
  goHC,
  gda,
  cliqueTargets,
  adjMethod,
  cutoff,
  qtarget,
  qprobInt,
  posRatio
)

Arguments

dfClust	dataframe used to build the final object
scm	single cell matrix normalized
scm_nm	single cell matrix not normalized/filtered
firstLevel	True if level 1, F if level > 1
clStop	vector of indices to determine when to stop
lev	level number tracking
tfs	vector of TFs names or IDs
setGenesHC	list of set of genes used for each splitting
goHC	list of GO for each set of genes used for each splitting
gda	data.frame of GO slim annotations
cliqueTargets	list of each antagonistic clique & targets used for the splitting
adjMethod	multiple test correction to perform
cutoff	p-adjusted p-value cutoff used for the enrichment

Value

list(dfClust,setGenesHC,goHC,cliqueTargets)

Author(s)

Celine Barlier

BarlierC/FunPart documentation built on Dec. 17, 2021, 10:45 a.m.