filter_norm_data: Clean (and normalize) the data
In BarlierC/FunPart: Functional splitting based on functionally relevant set of genes
Description
Usage
Arguments
Value
Author(s)
View source: R/filter_norm_data.R
Description
Clean (and normalize) the data
Usage
1
filter_norm_data(mtx, norm, percExp, qExp)
Arguments
mtx
single cell matrix (cells in columns / genes in rows)
norm
perform Seurat's normalization (True) or not (False)
percExp
percentage of cells in which the gene has to be expressed to be considered
qExp
quantile above which the genes are considered (QC step)
Value
cleaned (and normalized) matrix
Author(s)
Celine Barlier
BarlierC/FunPart documentation built on Dec. 17, 2021, 10:45 a.m.
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Description Usage Arguments Value Author(s)
View source: R/filter_norm_data.R
Description
Clean (and normalize) the data
Usage
1 | filter_norm_data(mtx, norm, percExp, qExp)
|
Arguments
mtx |
single cell matrix (cells in columns / genes in rows) |
norm |
perform Seurat's normalization (True) or not (False) |
percExp |
percentage of cells in which the gene has to be expressed to be considered |
qExp |
quantile above which the genes are considered (QC step) |
Value
cleaned (and normalized) matrix
Author(s)
Celine Barlier
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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