build_branch_module: CALLED BY build_levels_based_clique() to build cluster for...

In BarlierC/FunPart: Functional splitting based on functionally relevant set of genes

Description

CALLED BY build_levels_based_clique() to build cluster for the two branches of the level x

Usage

build_branch_module(
  dfClust,
  actuC,
  newC,
  scm,
  scm_nm,
  clStop,
  tfs,
  setGenesHC,
  goHC,
  gda,
  cliqueTargets,
  adjMethod,
  cutoff,
  qtarget,
  qprobInt,
  posRatio
)

Arguments

dfClust	dataframe as Cell | Cluster
actuC	number of actual cluster
newC	integer used to define the next cluster
scm	single cell RNA-seq matrix
scm_nm	single cell matrix not normalized/filtered
clStop	vector of indices to determine when to stop
tfs	vector of TFs names or IDs
setGenesHC	list of set of genes used for each splitting
goHC	list of GO for each set of genes used for each splitting
gda	data.frame of GO slim annotations
cliqueTargets	list of each antagonistic clique & targets used for the splitting
adjMethod	multiple test correction to perform
cutoff	p-adjusted p-value cutoff used for the enrichment

Value

list(dfClust,setGenesHC,goHC,cliqueTargets)

Author(s)

Celine Barlier

BarlierC/FunPart documentation built on Dec. 17, 2021, 10:45 a.m.