CLCfile1 documentation A dataset containing 8 variants (output CLC genomics workbench)
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 | 'data.frame': 8 obs. of 21 variables:
$ Chromosome : chr "chr1" "chr1" "chr1" "chr1" ...
$ Region : chr "266523" "363618" "604894" "699873" ...
$ Type : chr "SNV" "SNV" "SNV" "SNV" ...
$ Reference : chr "G" "A" "A" "G" ...
$ Allele : chr "T" "G" "G" "A" ...
$ Reference.allele : chr "No" "No" "No" "No" ...
$ Length : int 1 1 1 1 1 1 1 3
$ Linkage : logi NA NA NA NA NA NA ...
$ Zygosity : chr "Heterozygous" "Heterozygous" "Homozygous" "Homozygous" ...
$ Count : int 12 27 212 21 23 15 22 5
$ Coverage : int 24 52 212 21 23 61 62 5
$ Frequency : num 50 51.9 100 100 100 ...
$ Probability : num 1 1 1 1 1 1 1 1
$ Forward.read.count : int 8 27 134 17 23 7 5 1
$ Reverse.read.count : int 5 3 87 7 2 9 17 4
$ Forward.reverse.balance : num 0.385 0.1 0.394 0.292 0.08 0.438 0.227 0.2
$ Average.quality : num 38 36.1 36.2 35.1 33 ...
$ Coding.region.change : chr "ENSCAFT00000000001:c.1802C>A" "ENSCAFT00000000003:c.12A>G" "ENSCAFT00000000008:c.775T>C" "ENSCAFT00000037436:c.371C>T" ...
$ Amino.acid.change : chr "ENSCAFT00000000001:p.Pro601His" "ENSCAFT00000000003:p.Ile4Met" "ENSCAFT00000000008:p.Phe259Leu" "ENSCAFT00000037436:p.Ala124Val" ...
$ Other.variants.within.codon: chr "No" "No" "No" "No" ...
$ Non.synonymous : chr "Yes" "Yes" "Yes" "Yes" ...
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