varfilter: Filtering variants from a database.
In BartBroeckx/Mendelian: Variant Analysis for Mendelian Disorders

varfilter is used to filter case variants using a variant database (like dbSNP).

1	varfilter(x, y)

`x`	the data frame to be filtered
`y`	the data frame containing the variants.

After preprocessing the variant database with prepvar or prepvarpar, the actual filtering is done with varfilter.

Bart Broeckx

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out <-VCFfile(test, "V10", TRUE, "PASS")
a <-prepvar(SNP, 0.03,"refNCBI")
filtered <-varfilter(out,a)

BartBroeckx/Mendelian documentation built on May 5, 2019, 10:27 a.m.

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