Man pages for BenaroyaResearch/briDiscovr
Distribution analysis across clusters of a parent population overlaid with a rare subpopulation
| checkFcsFiles | Check a list of FCS files for a number of potential issues |
| checkForFcsByteOffsetIssue | Check for byte offset corruption in the header of an .fcs... |
| clusterDiscovrExperiment | Perform phenograph clustering for a DISCOV-R experiment |
| downsampleFcsList | Downsample a set of FCS files reproducibly, to make the event... |
| find_neighbors | K Nearest Neighbour Search |
| getEventIntensities | Compute and return individual event intensities from a... |
| getEventZScores | Compute and return individual event z-scores from a... |
| getFcsNEvents | Check the number of events in .fcs files |
| getMetaclusterOccupancy | Display the fraction of events that are found in each... |
| getSampleNames | Get all sample IDs in an experiment |
| getSubjectClusters | Display the per-subject number of clusters in an experiment |
| getSubjectCounts | Display the per-subject event counts in an experiment |
| is.discovrExperiment | discovrExperiment S3 class |
| jaccard_coeff | Compute jaccard coefficient between nearest-neighbor sets |
| makeMetaclusterHeatmaps | Generate heatmaps from a metaclustered experiment |
| metaclusterDiscovrExperiment | Perform metaclustering for a DISCOV-R experiment |
| print.discovrExperiment | Print method for discovrExperiment objects |
| recutMetaclusters | Re-cut a metaclustered experiment with a different target... |
| Rphenograph | RphenoGraph clustering |
| runUmapDiscovrExperiment | Calculate UMAP coordinates for the cells from a... |
| setupDiscovrExperiment | Prepare a dataset for DISCOV-R analysis |
