View source: R/clusteringPhase.R
clusterDiscovrExperiment | R Documentation |
Perform phenograph clustering for a DISCOV-R experiment
clusterDiscovrExperiment(
experiment,
method = "phenograph",
k = 30,
seed = 12345,
verbose = TRUE
)
experiment |
A discovrExperiment created using |
method |
A character string indicating the clustering method to use. Currently only 'phenograph' is supported as a clustering method. |
k |
An integer specifying the maximum number of nearest neighbors to use. Applies only if method = 'phenograph' (default: 30) |
seed |
A number to be used as the seed for pseudorandom number generation (default: 12345) |
verbose |
A boolean specifying whether to display processing messages (default: TRUE) |
An S3 object of class discovrExperiment
Mario G Rosasco, Virginia Muir
setupDiscovrExperiment
discovrExperiment
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