recutMetaclusters: Re-cut a metaclustered experiment with a different target...

In BenaroyaResearch/briDiscovr: Distribution analysis across clusters of a parent population overlaid with a rare subpopulation

Re-cut a metaclustered experiment with a different target number of metaclusters

Description

Re-cut a metaclustered experiment with a different target number of metaclusters

Usage

recutMetaclusters(
  experiment,
  nMetaclusters = 12,
  linkage = "ward.D2",
  distance = "euclidean",
  verbose = TRUE
)

Arguments

experiment	A discovrExperiment created using setupDiscovrExperiment, clustered using clusterDiscovrExperiment, and metaclustered using metaclusterDiscovrExperiment
nMetaclusters	A numeric indicating the number of metaclusters to generate (default: 12)
linkage	A string indicating the cluster linkage method to use when metaclustering. See hclust for more details. (default: "ward.D2")
distance	A string indicating the distance metric to use when metaclustering. (default: "euclidean")
verbose	A boolean specifying whether to display processing messages (default: TRUE)

Value

An S3 object of class discovrExperiment

Author(s)

Mario G Rosasco, Virginia Muir

See Also

metaclusterDiscovrExperiment

BenaroyaResearch/briDiscovr documentation built on March 15, 2024, 12:31 a.m.