addModels: addModels

In BenjaminChittick/BenCScore: Methods For Analysis of High-Throughput Screens

Description

Add z-score, RVM t-test, Bayesian RVM, and custom Bayesian models to HTS screening data

Usage

addModels(screen, alternative, ROPE, c = 0)

Arguments

screen	A data frame or data table containing screening data with columns: Plate_ID, Row, Column, Compound_ID, Well_Type, Run_ID, Compound_Plate, Value. See documentation for further description of column
alternative	String indicating direction of comparison. Must be either 'less' or 'greater'
ROPE	Region of Practical Equivalence a practical cutoff at which a compound could be active but so minimally so we do not care
c	Numeric value for the inactive popluation in RVM t-test. Use same value as ROPE. values

Examples

Load screen
data(mdmx)
mdmx <- applyModels(mdmx)

BenjaminChittick/BenCScore documentation built on May 5, 2019, 2:41 p.m.