Collection of various measures and tools for lncRNA annotation prediction put inside a redistributable R package. The package contains two main algorithms; lncRNA2GOA and TopoICSim. lncRNA2GOA tries to annotate novel genes (in this specific case lncRNAs) by using various correlation/geometric scoring methods on correlated expression data. After correlating/scoring, the results are annotated and enriched. TopoICSim is a topologically based method, that compares gene similarity based on the topology of the GO DAG by information content (IC) between GO terms.
Package details |
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Bioconductor views | GO GeneExpression GenePrediction |
Maintainer | |
License | MIT + file LICENSE |
Version | 1.5.1 |
URL | https://github.com/Berghopper/GAPGOM/ |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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