PlotAndromedaScore: Andromeda score for the best associated MS/MS spectrum.

Description Usage Arguments Value Examples

View source: R/PlotAndromedaScore.R

Description

Andromeda score for the best associated MS/MS spectrum.

Usage

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PlotAndromedaScore(
  MQCombined,
  show_median = TRUE,
  size_median = 1.5,
  palette = "Set2",
  plots_per_page = 5
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

show_median

If true it will show the median of each group, as a red dashed line.By default is TRUE.

size_median

The width of the median line in the plots.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

plots_per_page

Establish the maximum number of plots per page.

Value

Plots the MaxQuant Andromeda Score.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotAndromedaScore(MQCombined)

BioAlvaro/MQmetrics documentation built on Jan. 12, 2022, 3:02 p.m.