PlotiRTScore: Score vs retention time of the iRT peptides

In BioAlvaro/MQmetrics: Quality Control of Protemics Data

Description

Score vs retention time of the iRT peptides

Usage

PlotiRTScore(MQCombined, tolerance = 0.001, plots_per_page = 5)

Arguments

MQCombined	Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.
tolerance	Error maximum to find the iRT peptides by m/z value. by default is 0.001.
plots_per_page	Establish the maximum number of plots per page.#'

Value

A plot for each sample showing a linear regression of the iRT peptides' retention time vs the score.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotiRT(MQCombined)

BioAlvaro/MQmetrics documentation built on Jan. 12, 2022, 3:02 p.m.