PlotMsMs: Comparison of the MS/MS submitted and identified in each...

In BioAlvaro/MQmetrics: Quality Control of Protemics Data

Description

Comparison of the MS/MS submitted and identified in each sample.

Usage

PlotMsMs(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  position_dodge_width = 1,
  palette = "Set2"
)

Arguments

MQCombined	Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.
long_names	If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.
sep_names	If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.
position_dodge_width	Position of the columns within each others.
palette	The palette from the Package RColorBrewer. By default is 'Set2'.

Value

Plots the MS/MS submitted and Identified in each sample.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotMsMs(MQCombined)

BioAlvaro/MQmetrics documentation built on Jan. 12, 2022, 3:02 p.m.