make_MQCombined: Read MaxQuant Tables From Directory

Description Usage Arguments Value Examples

View source: R/make_MQCombined.R

Description

Read MaxQuant Tables From Directory

Usage

1
make_MQCombined(MQPathCombined, remove_contaminants = TRUE)

Arguments

MQPathCombined

The directory to the "combined" folder where the MaxQuant results are stored.

remove_contaminants

Whether or not to remove contaminants, reverse and identified by one one peptide.

Value

The files from the MaxQuant with the contaminants and Reverse hits removed.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)

BioAlvaro/MQmetrics documentation built on Jan. 12, 2022, 3:02 p.m.