Files in Bioconductor/AnnotationHubData

Transform public data resources into Bioconductor Data Structures

R/AnnotationHubMetadata-class.R R/HubMetadata-class.R R/ImportPreparer-class.R R/Message-class.R R/UCSCTrackUpdateChecker.R R/ahmToJson.R R/makeAnnotationHubResource.R R/makeChEA.R R/makeEncodeDCC.R R/makeEnsemblFasta.R R/makeEnsemblGtfToGRanges.R R/makeEnsemblTwoBit.R R/makeEpigenomeRoadmap.R R/makeGencodeFasta.R R/makeGencodeGFF.R R/makeGrasp2Db.R R/makeHaemCode.R R/makeInparanoid8ToDbs.R R/makeNCBIToOrgDbs.R R/makeRefNet.R R/makeStandardOrgDbsToSqlite.R R/makeStandardTxDbsToSqlite.R R/makeUCSC2Bit.R R/makeUCSCChain.R R/makeUCSCTracks.R R/makedbSNPVCF.R R/trackWithAuxiliaryTableToGRangesRecipe.R R/updateResources.R R/utils.R R/validationFunctions.R R/webAccessFunctions.R inst/scripts/CheatSheet.Rmd inst/scripts/oldVignettes/AnnotationHubData.Rmd inst/scripts/oldVignettes/AnnotationHubRecipes.Rmd inst/scripts/singleContributedResourceTemplate.R inst/unitTests/test_AnnotationHubConstructor.R inst/unitTests/test_ImportPreparer-class.R inst/unitTests/test_recipe.R inst/unitTests/test_validityFunctions.R inst/unitTests/test_webAccessFunctions.R man/AnnotationHubData-package.Rd man/AnnotationHubMetadata-class.Rd man/ImportPreparer-class.Rd man/flog.Rd man/makeAnnotationHubMetadata.Rd man/makeEnsemblFasta.Rd man/makeGencodeFasta.Rd man/makeStandardOrgDbs.Rd man/updateResources.Rd man/upload_to_S3.Rd man/upload_to_azure.Rd man/validationFunctions.Rd tests/AnnotationHubData_unit_tests.R vignettes/IntroductionToAnnotationHubData.Rmd