RocheSet-class | R Documentation |
This class is meant to coordinate all data in a Roche (454)
experiment. See SRSet
for additional details.
Create objects from this class using one of the RocheSet
methods documented below
sourcePath
:Object of class "RochePath"
The
file system location of the data used in this experiment.
readIndex
:Object of class "integer"
indexing
reads included in the experiment; see SRSet
for details on data representation in this class.
readCount
:Object of class "integer"
containing the number of reads associated with each sample; see
SRSet
for details on data representation in
this class.
phenoData
:Object of class "AnnotatedDataFrame"
with as many rows as there are samples, containing information on
experimental design.
readData
:Object of class "AnnotatedDataFrame"
containing as many rows as there are reads, containing information
on each read in the experiment.
Class "SRSet"
, directly.
Class ".Roche"
, directly.
Class ".ShortReadBase"
, by class "SRSet", distance 2.
Class ".ShortReadBase"
, by class ".Roche", distance 2.
No methods defined with class "RocheSet" in the signature; see
SRSet
for inherited methods.
Michael Lawrence <mflawrence@fhcrc.org>
SRSet
showClass("RocheSet")
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