alphabetScore: Efficiently calculate the sum of quality scores across bases
In Bioconductor/ShortRead: FASTQ input and manipulation
alphabetScore R Documentation
Efficiently calculate the sum of quality scores across bases
Description
This generic takes a QualityScore or
PhredQuality object and calculates, for each read, the sum of
the encoded nucleotide probabilities.
Usage
alphabetScore(object, ...)
Arguments
object
An object of class QualityScore.
...
Additional arguments, currently unused.
Value
A vector of numeric values of length equal to the length of
object.
Author(s)
Martin Morgan <mtmorgan@fhcrc.org>
Bioconductor/ShortRead documentation built on Nov. 2, 2024, 4:38 p.m.
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| alphabetScore | R Documentation |
Efficiently calculate the sum of quality scores across bases
Description
This generic takes a QualityScore or
PhredQuality object and calculates, for each read, the sum of
the encoded nucleotide probabilities.
Usage
alphabetScore(object, ...)
Arguments
object |
An object of class |
... |
Additional arguments, currently unused. |
Value
A vector of numeric values of length equal to the length of
object.
Author(s)
Martin Morgan <mtmorgan@fhcrc.org>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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