readBfaToc: (Legacy) Get a list of the sequences in a Maq .bfa file
In Bioconductor/ShortRead: FASTQ input and manipulation
readBfaToc R Documentation
(Legacy) Get a list of the sequences in a Maq .bfa file
Description
As coverage needs to know the lengths of the reference sequences,
this function is provided which extracts this information from
a .bfa file (Maq's "binary FASTA" format).
Usage
readBfaToc( bfafile )
Arguments
bfafile
The file name of the .bfa file.
Value
An integer vector with one element per
reference sequence found in the .bfa file, each vector element named with the
sequence name and having the sequence length as value.
Author(s)
Simon Anders, EMBL-EBI, sanders@fs.tum.de
(Note: The C code for this function incorporates code from Li Heng's MAQ
software, (c) Li Heng and released by him under GPL 2.
Bioconductor/ShortRead documentation built on April 25, 2024, 2:08 a.m.
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| readBfaToc | R Documentation |
(Legacy) Get a list of the sequences in a Maq .bfa file
Description
As coverage needs to know the lengths of the reference sequences,
this function is provided which extracts this information from
a .bfa file (Maq's "binary FASTA" format).
Usage
readBfaToc( bfafile )
Arguments
bfafile |
The file name of the .bfa file. |
Value
An integer vector with one element per reference sequence found in the .bfa file, each vector element named with the sequence name and having the sequence length as value.
Author(s)
Simon Anders, EMBL-EBI, sanders@fs.tum.de
(Note: The C code for this function incorporates code from Li Heng's MAQ software, (c) Li Heng and released by him under GPL 2.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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