Files in Bioconductor/graph
graph: A package to handle graph data structures
.Rbuildignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/GXLformals.R
R/MultiGraph.R
R/NELhandler.R
R/TODOT.R
R/attrData.R
R/bitarray.R
R/buildDepGraph.R
R/clustergraph.R
R/edgefunctions.R
R/graph-constructors.R
R/graphNEL.R
R/graphfunctions.R
R/gxlReader.R
R/mat2graph.R
R/methods-graph.R
R/methods-graphAM.R
R/methods-graphBAM.R
R/methods-multiGraph.R
R/nodes-methods.R
R/random.R
R/reverseEdgeDirections.R
R/settings.R
R/standardLabeling.R
R/toDotWithRI.R
R/write.tlp.R
R/zzz.R
TODO
data/MAPKsig.rda
data/apopGraph.rda
data/biocRepos.rda
data/defunctGraph.rda
data/esetsFemale.rda
data/esetsMale.rda
data/graphExamples.rda
data/integrinMediatedCellAdhesion.rda
data/pancrCaIni.rda
inst/GXL/attributesExample.gxl
inst/GXL/c2.gxl
inst/GXL/complexExample.gxl
inst/GXL/createGraphExamples.R
inst/GXL/graphExample-01.gxl.gz
inst/GXL/graphExample-02.gxl.gz
inst/GXL/graphExample-03.gxl.gz
inst/GXL/graphExample-04.gxl.gz
inst/GXL/graphExample-05.gxl.gz
inst/GXL/graphExample-06.gxl.gz
inst/GXL/graphExample-07.gxl.gz
inst/GXL/graphExample-08.gxl.gz
inst/GXL/graphExample-09.gxl.gz
inst/GXL/graphExample-10.gxl.gz
inst/GXL/graphExample-11.gxl.gz
inst/GXL/graphExample-12.gxl.gz
inst/GXL/graphExample-13.gxl.gz
inst/GXL/graphExample-14.gxl.gz
inst/GXL/graphExample-15.gxl.gz
inst/GXL/graphExample-16.gxl.gz
inst/GXL/graphExample-17.gxl.gz
inst/GXL/graphExample-18.gxl.gz
inst/GXL/gxl-1.0.1.dtd
inst/GXL/kmstEx.gxl
inst/GXL/outOfOrderExample.gxl
inst/GXL/simplExample.gxl.www
inst/GXL/simpleExample.gxl
inst/Scripts/Graph.R
inst/Scripts/distGraph.R
inst/Scripts/multigraph.R
inst/Scripts/pTreetest.R
inst/Scripts/testintersection.R
inst/old/GraphDesign.tex
inst/old/GraphDoc.tex
inst/old/R/class.R
inst/old/R/graphH.R
inst/old/R/property.R
inst/old/R/ruuid-based.R
inst/old/man/asGraphProperty.Rd
inst/old/man/gEdge-class.Rd
inst/old/man/gNode-class.Rd
inst/old/man/generalGraph-class.Rd
inst/old/man/graphH-class.Rd
inst/old/man/graphID-class.Rd
inst/old/man/hashtable-class.Rd
inst/old/man/hashtable.Rd
inst/old/man/propertyHolder-class.Rd
inst/perf/Makefile
inst/perf/bgt.R
inst/perf/graphperf.Rnw
inst/perf/multigraphs.Rnw
inst/unitTests/MultiGraph_test.R
inst/unitTests/attrData_test.R
inst/unitTests/clusterGraph_test.R
inst/unitTests/degree_test.R
inst/unitTests/edgeWeights_test.R
inst/unitTests/graphAM_test.R
inst/unitTests/graphBAM_test.R
inst/unitTests/graphNEL_test.R
inst/unitTests/gxl_test.R
inst/unitTests/leaves_test.R
inst/unitTests/nodeAndEdgeData_test.R
inst/unitTests/setbit_test.R
inst/unitTests/simple_sparse_test.R
man/DFS.Rd
man/IMCA.Rd
man/MAPKsig.Rd
man/MultiGraph-class.Rd
man/acc-methods.Rd
man/addEdge.Rd
man/addNode.Rd
man/adj-methods.Rd
man/adjacencyMatrix.Rd
man/apoptosisGraph.Rd
man/attrData-class.Rd
man/attrDataItem-methods.Rd
man/attrDefaults-methods.Rd
man/aveNumEdges.Rd
man/biocRepos.Rd
man/boundary.Rd
man/calcProb.Rd
man/calcSumProb.Rd
man/clearNode.Rd
man/clusterGraph-class.Rd
man/clusteringCoefficient-methods.Rd
man/combineNodes.Rd
man/defunct.Rd
man/distGraph-class.Rd
man/duplicatedEdges.Rd
man/edgeData-methods.Rd
man/edgeDataDefaults-methods.Rd
man/edgeMatrix.Rd
man/edgeSets.Rd
man/edgeWeights.Rd
man/fromGXL-methods.Rd
man/graph-class.Rd
man/graph2SparseM.Rd
man/graphAM-class.Rd
man/graphBAM-class.Rd
man/graphExamples.Rd
man/graphNEL-class.Rd
man/inEdges.Rd
man/internal.Rd
man/isAdjacent-methods.Rd
man/isDirected-methods.Rd
man/leaves.Rd
man/listEdges.Rd
man/matrix2Graph.Rd
man/mostEdges.Rd
man/multigraph.Rd
man/nodeData-methods.Rd
man/nodeDataDefaults-methods.Rd
man/numNoEdges.Rd
man/pancrCaIni.Rd
man/randomEGraph.Rd
man/randomGraph.Rd
man/randomNodeGraph.Rd
man/removeEdge.Rd
man/removeNode.Rd
man/renderInfo-class.Rd
man/reverseEdgeDirections.Rd
man/settings.Rd
man/simpleEdge-class.Rd
man/standardLabeling.Rd
man/subGraph.Rd
man/toDotR-methods.Rd
man/toDotWithRI.Rd
man/ugraph.Rd
man/validGraph.Rd
man/write.tlp.Rd
src/Makevars
src/graph.c
tests/graph_unit_tests.R
vignettes/GraphClass.Rmd
vignettes/MultiGraphClass.Rmd
vignettes/clusterGraph.Rmd
vignettes/graph.Rmd
vignettes/graphAttributes.Rmd
vignettes/references.bib
