Man pages for Bioconductor/graph
graph: A package to handle graph data structures
| acc-methods | Methods for Accessibility Lists |
| addEdge | addEdge |
| addNode | addNode |
| adjacencyMatrix | Compute an Adjacency Matrix for a graphBAM object |
| adj-methods | Methods for finding the adjacency list for selected nodes. |
| apoptosisGraph | KEGG apoptosis pathway graph |
| attrData-class | Class "attrData" |
| attrDataItem-methods | Get and set attributes values for items in an attrData object |
| attrDefaults-methods | Get and set the default attributes of an attrData object |
| aveNumEdges | Calculate the average number of edges in a graph |
| biocRepos | A graph representing the Bioconductor package repository |
| boundary | Returns the Boundary between a Graph and a SubGraph |
| calcProb | Calculate the hypergeometric probability of the subgraph's... |
| calcSumProb | Calculate the probability that a subgraph has an unusual... |
| clearNode | clearNode |
| clusterGraph-class | Class "clusterGraph" |
| clusteringCoefficient-methods | Clustering coefficient of a graph |
| combineNodes | combineNodes |
| defunct | Defunct Functions in Package 'graph' |
| DFS | Depth First Search |
| distGraph-class | Class "distGraph" |
| duplicatedEdges | duplicatedEdges |
| edgeDataDefaults-methods | Get and set default attributes for the edges of a graph |
| edgeData-methods | Get and set attributes for the edges of a graph object |
| edgeMatrix | Compute an Edge Matrix or weight vector for a Graph |
| edgeSets | MultiGraph edgeSet data |
| edgeWeights | Retrieve the edge weights of a graph |
| fromGXL-methods | Methods for GXL manipulations in package graph |
| graph2SparseM | Coercion methods between graphs and sparse matrices |
| graphAM-class | Class "graphAM" |
| graphBAM-class | EXPERIMENTAL class "graphBAM" |
| graph-class | Class "graph" |
| graphExamples | A List Of Example Graphs |
| graphNEL-class | Class "graphNEL" |
| IMCA | KEGG Integrin Mediated Cell Adhesion graph |
| inEdges | Generic Method inEdges |
| internal | Variables used for internal purposes |
| isAdjacent-methods | Determine if nodes share an edge in a graph |
| isDirected-methods | Determine if a graph has directed or undirected edges |
| leaves | Find the leaves of a graph |
| listEdges | List the Edges of a Graph |
| MAPKsig | A graph encoding parts of the MAPK signaling pathway |
| matrix2Graph | Coercions between matrix and graph representations |
| mostEdges | Find the node in a graph with the greatest number of edges |
| multigraph | Class "multiGraph" |
| MultiGraph-class | EXPERIMENTAL class "MultiGraph" |
| nodeDataDefaults-methods | Get and set default attributes for the nodes of a graph |
| nodeData-methods | Get and set attributes for the nodes of a graph object |
| numNoEdges | Calculate the number of nodes that have an edge list of NULL |
| pancrCaIni | A graph encoding parts of the pancreatic cancer initiation... |
| randomEGraph | Random Edge Graph |
| randomGraph | Random Graph |
| randomNodeGraph | Generate Random Graph with Specified Degree Distribution |
| removeEdge | removeEdge |
| removeNode | removeNode |
| renderInfo-class | Class "renderInfo" |
| reverseEdgeDirections | Reverse the edges of a directed graph |
| settings | Graphical parameters and other settings |
| simpleEdge-class | Class "simpleEdge". |
| standardLabeling | Standard labeling of edges with integers |
| subGraph | Create a Subgraph |
| toDotR-methods | Methods for Function toDotR, using R to generate a dot... |
| toDotWithRI | Translate a graph to "dot" including rendering information |
| ugraph | Underlying Graph |
| validGraph | Test whether graph object is valid |
| write.tlp | Write a graph object in a file in the Tulip format |
