TCGAanalyze_Pathview: Generate pathview graph
In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
TCGAanalyze_Pathview R Documentation
Generate pathview graph
Description
TCGAanalyze_Pathview pathway based data integration and visualization.
Usage
TCGAanalyze_Pathview(dataDEGs, pathwayKEGG = "hsa05200")
Arguments
dataDEGs
dataDEGs
pathwayKEGG
pathwayKEGG
Value
an adjacent matrix
Examples
## Not run:
dataDEGs <- data.frame(mRNA = c("TP53","TP63","TP73"), logFC = c(1,2,3))
TCGAanalyze_Pathview(dataDEGs)
## End(Not run)
BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.
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| TCGAanalyze_Pathview | R Documentation |
Generate pathview graph
Description
TCGAanalyze_Pathview pathway based data integration and visualization.
Usage
TCGAanalyze_Pathview(dataDEGs, pathwayKEGG = "hsa05200")
Arguments
dataDEGs |
dataDEGs |
pathwayKEGG |
pathwayKEGG |
Value
an adjacent matrix
Examples
## Not run:
dataDEGs <- data.frame(mRNA = c("TP53","TP63","TP73"), logFC = c(1,2,3))
TCGAanalyze_Pathview(dataDEGs)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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