TCGAanalyze_networkInference: infer gene regulatory networks
In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
TCGAanalyze_networkInference R Documentation
infer gene regulatory networks
Description
TCGAanalyze_networkInference taking expression data as input,
this will return an adjacency matrix of interactions
Usage
TCGAanalyze_networkInference(data, optionMethod = "clr")
Arguments
data
expression data, genes in columns, samples in rows
optionMethod
inference method, chose from aracne, c3net, clr and mrnet
Value
an adjacent matrix
BioinformaticsFMRP/TCGAbiolinks documentation built on Jan. 25, 2025, 4:33 p.m.
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| TCGAanalyze_networkInference | R Documentation |
infer gene regulatory networks
Description
TCGAanalyze_networkInference taking expression data as input, this will return an adjacency matrix of interactions
Usage
TCGAanalyze_networkInference(data, optionMethod = "clr")
Arguments
data |
expression data, genes in columns, samples in rows |
optionMethod |
inference method, chose from aracne, c3net, clr and mrnet |
Value
an adjacent matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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