TCGAbiolinks-package: The aim of TCGAbiolinks is : i) facilitate the TCGA...
In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
TCGAbiolinks-package R Documentation
The aim of TCGAbiolinks is : i) facilitate the TCGA open-access data retrieval,
ii) prepare the data using the appropriate pre-processing strategies,
iii) provide the means to carry out different standard analyses and
iv) allow the user to download a specific version of the data and thus to easily reproduce earlier research results.
In more detail, the package provides multiple methods for analysis
(e.g., differential expression analysis, identifying differentially methylated regions)
and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.
Description
The functions you're likely to need from TCGAbiolinks is
GDCdownload, GDCquery.
Otherwise refer to the vignettes to see
how to format the documentation.
See Also
Useful links:
BioinformaticsFMRP/TCGAbiolinks documentation built on June 2, 2025, 7:21 a.m.
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| TCGAbiolinks-package | R Documentation |
The aim of TCGAbiolinks is : i) facilitate the TCGA open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) allow the user to download a specific version of the data and thus to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.
Description
The functions you're likely to need from TCGAbiolinks is
GDCdownload, GDCquery.
Otherwise refer to the vignettes to see
how to format the documentation.
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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