TCGAbiolinks-package: The aim of TCGAbiolinks is : i) facilitate the TCGA...

In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

The aim of TCGAbiolinks is : i) facilitate the TCGA open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) allow the user to download a specific version of the data and thus to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

Description

The functions you're likely to need from TCGAbiolinks is GDCdownload, GDCquery. Otherwise refer to the vignettes to see how to format the documentation.

See Also

Useful links:

• https://github.com/BioinformaticsFMRP/TCGAbiolinks

• Report bugs at https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues

BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.