UseRaw_afterFilter: Use raw count from the DataPrep object which genes are...

In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Use raw count from the DataPrep object which genes are removed by normalization and filtering steps.

Description

function to keep raw counts after filtering and/or normalizing.

Usage

UseRaw_afterFilter(DataPrep, DataFilt)

Arguments

DataPrep	DataPrep object returned by TCGAanalyze_Preprocessing()
DataFilt	Filtered data frame containing samples in columns and genes in rows after normalization and/or filtering steps

Value

Filtered return object similar to DataPrep with genes removed after normalization and filtering process.

Examples

## Not run: 
  dataPrep_raw <- UseRaw_afterFilter(dataPrep, dataFilt)

## End(Not run)

BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.