maftools_clinical_feature_description: Get a data.frame describing each clinical feature of a MAF
In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'
maftools_clinical_feature_description R Documentation
Get a data.frame describing each clinical feature of a MAF
Description
Get a data.frame describing each clinical feature of a MAF
Usage
maftools_clinical_feature_description(
maf,
checkmark = c("none", "oncoplottable")
)
Arguments
maf
a maftools maf object
checkmark
should a pass/fail checkmark icon be added before the annotations name. (none = no pass/fail checkmark; oncoplottable = whether feature can be added to an oncoplot)
Details
Rule for pass/fail checks:
To be 'oncoplottable' there must be <= 100 non-missing levels OR the feature must be numeric
Value
a data.frame with 3 columns. annotation (feature name); type (whether feature is numeric/categorical); levels (number of distinct, non-na values); content (html string with names + badges with additional information)
CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.
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| maftools_clinical_feature_description | R Documentation |
Get a data.frame describing each clinical feature of a MAF
Description
Get a data.frame describing each clinical feature of a MAF
Usage
maftools_clinical_feature_description(
maf,
checkmark = c("none", "oncoplottable")
)
Arguments
maf |
a maftools maf object |
checkmark |
should a pass/fail checkmark icon be added before the annotations name. (none = no pass/fail checkmark; oncoplottable = whether feature can be added to an oncoplot) |
Details
Rule for pass/fail checks: To be 'oncoplottable' there must be <= 100 non-missing levels OR the feature must be numeric
Value
a data.frame with 3 columns. annotation (feature name); type (whether feature is numeric/categorical); levels (number of distinct, non-na values); content (html string with names + badges with additional information)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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