maftools_get_all_data: Get MAF data
In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'
View source: R/fct_maftools_extending_functions.R
maftools_get_all_data R Documentation
Get MAF data
Description
Input a maf object. Returns table containing ALL MAF data. Nonsynonymous AND synonymous
Usage
maftools_get_all_data(maf, include_silent_mutations = T)
Arguments
maf
maf object
include_silent_mutations
include silent mutations (flag)
Value
a data.frame in MAF form where each variant has a separate row (data.frame)
Examples
CRUX:::maftools_get_all_data(maftools::tcgaLoad("GBM"))
CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.
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View source: R/fct_maftools_extending_functions.R
| maftools_get_all_data | R Documentation |
Get MAF data
Description
Input a maf object. Returns table containing ALL MAF data. Nonsynonymous AND synonymous
Usage
maftools_get_all_data(maf, include_silent_mutations = T)
Arguments
maf |
maf object |
include_silent_mutations |
include silent mutations (flag) |
Value
a data.frame in MAF form where each variant has a separate row (data.frame)
Examples
CRUX:::maftools_get_all_data(maftools::tcgaLoad("GBM"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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