maftools_remove_dubious_genes: Filter dubious genes from MAF
In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'
maftools_remove_dubious_genes R Documentation
Filter dubious genes from MAF
Description
Filter out genes likely to appear in many analyses from your MAF (e.g. TTN & Olfactory receptors )
Usage
maftools_remove_dubious_genes(maf, genelist = somaticflags::somaticflags)
Arguments
maf
a MAF object
genelist
a character vector containing HUGO Symbols to remove from MAF
Value
MAF object
Examples
CRUX:::maftools_remove_dubious_genes(maftools::tcgaLoad("gbm"), "TTN")
CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.
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| maftools_remove_dubious_genes | R Documentation |
Filter dubious genes from MAF
Description
Filter out genes likely to appear in many analyses from your MAF (e.g. TTN & Olfactory receptors )
Usage
maftools_remove_dubious_genes(maf, genelist = somaticflags::somaticflags)
Arguments
maf |
a MAF object |
genelist |
a character vector containing HUGO Symbols to remove from MAF |
Value
MAF object
Examples
CRUX:::maftools_remove_dubious_genes(maftools::tcgaLoad("gbm"), "TTN")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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