tcga_dataset_to_maf_dataset_wrapper: TCGA to maf_dataset_wrapper

In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'

TCGA to maf_dataset_wrapper

Description

Takes a TCGA cohort abbreviation

Usage

tcga_dataset_to_maf_dataset_wrapper(
  maf_data_pool,
  tcga_study_abbreviation,
  source = "Firehose"
)

Arguments

maf_data_pool	the data pool to add the dataset wrapper to (maf_data_pool)
tcga_study_abbreviation	a TCGA cohort abbreviation (see maftools::tcgaAvailable()) (string)
source	'MC3' or 'Firehose'. Source of TCGA data to use. See ?maftools::tcgaLoad for details (string)

Value

functions and values associated with specified TCGA cohort (maf_dataset_wrapper)

See Also

Other DataToWrapper: tcga_dataset_to_data_pool(), tcga_datasets_to_data_pool(), user_data_filepath_to_class_maf_dataset_wrapper(), user_to_dataset_to_data_pool()

Examples

ACC_maf_dataset_wrapper <- CRUX:::tcga_dataset_to_maf_dataset_wrapper(
  CRUX:::new_maf_data_pool(), 
  "ACC"
)

CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.