tcga_datasets_to_data_pool: Adds all TCGA cohort to data pool

In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'

Adds all TCGA cohort to data pool

Description

Takes a maf_data_poolobject and adds maf_dataset_wrappers for all tcga datasets available

Usage

tcga_datasets_to_data_pool(maf_data_pool, source = "Firehose")

Arguments

maf_data_pool	the data pool to add the dataset wrapper to (maf_data_pool)
source	'MC3' or 'Firehose'. Source of TCGA data to use. See ?maftools::tcgaLoad for details (string)

Value

returns a data pool object with extra dataset added (maf_data_pool)

See Also

Other DataToWrapper: tcga_dataset_to_data_pool(), tcga_dataset_to_maf_dataset_wrapper(), user_data_filepath_to_class_maf_dataset_wrapper(), user_to_dataset_to_data_pool()

Examples

CRUX:::tcga_datasets_to_data_pool(CRUX:::new_maf_data_pool(), source = "Firehose")

CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.