geneScreen: Gene Screen
In CHuanSite/SJD: Structured Joint Decomposition (SJD)

geneScreen

R Documentation

Gene Screen

Description

Screen genes based on their standard deviation

Usage

geneScreen(dataset, screen_prob)

Arguments

`dataset`	A list of dataset to be analyzed
`screen_prob`	A vector of probabilies for genes to be chosen

Value

A list contains the component and the score of each dataset on every component after jointPCA algorithm

Examples

dataset = list(matrix(runif(5000, 1, 2), nrow = 100, ncol = 50),
matrix(runif(5000, 1, 2), nrow = 100, ncol = 50),
matrix(runif(5000, 1, 2), nrow = 100, ncol = 50),
matrix(runif(5000, 1, 2), nrow = 100, ncol = 50))

screen_prob = c(0.2, 0.2, 0.2, 0.2)

screened_dataset = geneScreen(dataset, screen_prob)

CHuanSite/SJD documentation built on Nov. 29, 2024, 5:52 a.m.