API for Caetanods/sequence-trait
Phylogenetic Comparative Methods to Study Sequence Traits and Correlated Evolution
| Global functions | |
|---|---|
| CorrSeq | Man page |
| CorrSeq-package | Man page |
| computeM | Source code |
| discreteGamma | Source code |
| findMaxBeta | Source code |
| findMinBeta | Source code |
| fitCorrSeq | Man page Source code |
| get.invar | Source code |
| get.seq | Source code |
| getAIC | Source code |
| getAICc | Source code |
| getAverageRates | Man page Source code |
| getFirstUnit | Source code |
| getIntUnit | Source code |
| getLastUnit | Source code |
| getLogLikMk | Man page Source code |
| getRates | Man page Source code |
| getRootMarginal | Man page Source code |
| getSiteRatesAutoDiscGamma | Source code |
| logLikAutoDiscGamma_C | Source code |
| logLikMk | Source code |
| logLikMk_C | Source code |
| logSumExp | Source code |
| loglikGammaSimple_C | Source code |
| loglikSingleRate_C | Source code |
| make.average.rate | Source code |
| make.data.tips | Source code |
| make.data.tips.numeric | Source code |
| makePropPi | Source code |
| makePropQ.symm | Source code |
| makeSymDTMCMatrix | Source code |
| multiplierProposal | Source code |
| pbivGamma | Source code |
| readFasta2Matrix | Man page Source code |
| slideWindowReflective | Source code |
| uniformPrior | Source code |
