Files in Caetanods/sequence-trait
Phylogenetic Comparative Methods to Study Sequence Traits and Correlated Evolution
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AIC_AICc.R
R/CorrSeq.R
R/RcppExports.R
R/computeM.R
R/discreteGamma.R
R/findMaxBeta.R
R/fitMLGammaSpanSpace.R
R/getAverageRates.R
R/getLogLikMk.R
R/getRates.R
R/getRootMarginal.R
R/getSiteRatesAutoDiscGamma.R
R/logLikAutoDiscGamma_C.R
R/logLikGammaSimple_C.R
R/logLikMk.R
R/logLikSingleRate_C.R
R/logSumExp.R
R/makeSymDTMCMatrix.R
R/pbivGamma.R
R/priors.R
R/proposals.R
R/readFasta2Matrix.R
README.md
cleanup
configure
man/CorrSeq.Rd
man/fitCorrSeq.Rd
man/getAverageRates.Rd
man/getLogLikMk.Rd
man/getRates.Rd
man/getRootMarginal.Rd
man/readFasta2Matrix.Rd
src/.gitignore
src/Makevars
src/Makevars.in
src/RcppExports.cpp
src/source.cpp
