API for Caetanods/sequence-trait
Phylogenetic Comparative Methods to Study Sequence Traits

Global functions
computeM Source code
discreteGamma Source code
findMaxBeta Source code
fitMLGammaSpanSpace Man page Source code
fitMLStateDiversity Man page Source code
get.invar Source code
get.seq Source code
getAIC Source code
getAICc Source code
getFirstUnit Source code
getIntUnit Source code
getLastUnit Source code
getLogLikMk Man page Source code
getRates Man page Source code
getRootMarginal Man page Source code
getSiteRatesAutoDiscGamma Source code
logLikAutoDiscGamma_C Source code
logLikMk Source code
logLikMk_C Source code
logSumExp Source code
loglikGammaSimple_C Source code
loglikSingleRate_C Source code
make.data.tips Source code
make.data.tips.numeric Source code
makePropPi Source code
makePropQ.symm Source code
makeSymDTMCMatrix Source code
multiplierProposal Source code
pbivGamma Source code
readFasta2Matrix Man page Source code
readMCMC Man page Source code
runMCMCFreeModel Man page Source code
runMCMCSimple Man page Source code
seqtraits Man page
seqtraits-package Man page
slideWindowReflective Source code
uniformPrior Source code
Caetanods/sequence-trait documentation built on Dec. 12, 2018, 1:22 p.m.