readFasta2Matrix: Read a FASTA file and returns a matrix
In Caetanods/sequence-trait: Phylogenetic Comparative Methods to Study Sequence Traits and Correlated Evolution
View source: R/readFasta2Matrix.R
readFasta2Matrix R Documentation
Read a FASTA file and returns a matrix
Description
Reads a FASTA file of any type and returns a matrix with the species as rows and the sequence positions as columns.
Usage
readFasta2Matrix(file)
Arguments
file
the FASTA file to be read.
Details
Each site of the FASTA file is transformed into a "character" in the matrix. The function only works for sequences of the same length (i.e., alignments).
Value
a matrix with the sequence trait
Author(s)
Daniel Caetano
Caetanods/sequence-trait documentation built on Nov. 25, 2022, 4:32 p.m.
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View source: R/readFasta2Matrix.R
| readFasta2Matrix | R Documentation |
Read a FASTA file and returns a matrix
Description
Reads a FASTA file of any type and returns a matrix with the species as rows and the sequence positions as columns.
Usage
readFasta2Matrix(file)
Arguments
file |
the FASTA file to be read. |
Details
Each site of the FASTA file is transformed into a "character" in the matrix. The function only works for sequences of the same length (i.e., alignments).
Value
a matrix with the sequence trait
Author(s)
Daniel Caetano
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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