Man pages for Caetanods/sequence-trait
Phylogenetic Comparative Methods to Study Sequence Traits

fitMLGammaSpanSpaceFind the maximum likelihood for the model with the gamma...
fitMLStateDiversityFind the maximum likelihood for the state diversity model.
getLogLikMkCompute the loglik for the model.
getRatesExtract rates of evolution for sequence positions.
getRootMarginalFunction to compute the marginal estimate of root values.
readFasta2MatrixRead a FASTA file and returns a matrix
readMCMCRead the MCMC from files.
runMCMCFreeModelA simple MCMC sampler for the model.
runMCMCSimpleA simple MCMC sampler for the model.
seqtraitsseqtraits
Caetanods/sequence-trait documentation built on Dec. 12, 2018, 1:22 p.m.