Man pages for Caetanods/sequence-trait
Phylogenetic Comparative Methods to Study Sequence Traits and Correlated Evolution
| CorrSeq | CorrSeq |
| fitCorrSeq | Maximum likelihood estimate of evolutionary rates |
| getAverageRates | Model average rates along the positions of the sequence trait |
| getLogLikMk | Compute the loglik for the model. |
| getRates | Extract rates of evolution from fitted models |
| getRootMarginal | Function to compute the marginal estimate of root values. |
| readFasta2Matrix | Read a FASTA file and returns a matrix |
